
To demonstrate the existence of the ultimate value of the binding energy two models are considered: macroscopic and microscopic, both giving the same conclusions: the critical value of absolute meaning of binding energy is 50-100kJ/M. If the binding energy exceeds this value, then drug essentially perturbs protein configuration. In a microscopic picture this perturbation is a sequence of irreversible conformational transitions in protein body. In a macroscopic one it is an inelastic deformation of a protein substance. Our estimation agrees with the experimental value (50 kJ /M) of the ultimate energy that can be stored in a protein molecule without its destruction.
The existence of the critical value of binding energy should be accounted in structure based drug design methods where protein molecule is considered in an elastic deformation approximation.
Reference: accepted in Russian Journal of Biophysics, 2008
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